rs30978085 SNP Detail

Summary

• ID
  rs30978085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55205473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAA GTAGACATTG TGTTCAGGAG
  R
  CAAAGCCAGA CTCCCCTGCT CTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39241384	mCV23144802	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss52723018	NES15567934	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	A		G	A	A	A		A
ss139574336	ENSMUSSNP3223968	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							A
ss324641227	CHEV_14_55586853	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30978085					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723018	NES15567934	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55205473 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	742 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1089 bp upstream
Rr407057	regulatory region 407057	233 bp distal
Rr492378	regulatory region 492378	1422 bp distal
Rr492379	regulatory region 492379	885 bp distal
Rr492380	regulatory region 492380	219 bp proximal
Rr492381	regulatory region 492381	1645 bp proximal
Tssr4419	transcription start site region 4419	1714 bp upstream
Tssr4420	transcription start site region 4420	1601 bp upstream
Tssr4421	transcription start site region 4421	1595 bp upstream
Tssr4422	transcription start site region 4422	1543 bp upstream
Tssr4423	transcription start site region 4423	1517 bp upstream
Tssr4424	transcription start site region 4424	1479 bp upstream
Tssr4425	transcription start site region 4425	1366 bp upstream
Tssr125718	transcription start site region 125718	656 bp upstream
Tssr125719	transcription start site region 125719	735 bp upstream
Tssr125720	transcription start site region 125720	765 bp upstream
Tssr125721	transcription start site region 125721	785 bp upstream
Tssr125722	transcription start site region 125722	1210 bp upstream
Tssr125723	transcription start site region 125723	1279 bp upstream
Tssr125724	transcription start site region 125724	1291 bp upstream
Tssr128742	transcription start site region 128742	1431 bp upstream
Tssr128743	transcription start site region 128743	1408 bp upstream
Tssr128744	transcription start site region 128744	1079 bp upstream
Tssr128745	transcription start site region 128745	794 bp upstream
Tssr128746	transcription start site region 128746	41 bp upstream
Tssr128747	transcription start site region 128747	17 bp upstream
Tssr128748	transcription start site region 128748	within coordinates
Tssr128749	transcription start site region 128749	47 bp downstream
Tssr128750	transcription start site region 128750	66 bp downstream
Tssr128751	transcription start site region 128751	83 bp downstream
Tssr128752	transcription start site region 128752	136 bp downstream
Tssr128753	transcription start site region 128753	325 bp downstream
Tssr128754	transcription start site region 128754	404 bp downstream