rs30979123 SNP Detail

Summary

• ID
  rs30979123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:143654853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TGTAGGAAAG AAGAGTCAAA
  Y
  GTGCTTCTGG CTTGGGTGGA TAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45113029	mCV24687435	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss49689789	NES12979885	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C	T	T		C	C		C
ss145631909	ENSMUSSNP6122525	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320010612	CHEV_1_145626245	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30979123					SNP	C	C	T	C	C	C	T	C	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49689789	NES12979885	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143654853 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi837	CpG island 837			1055 bp distal
Gm25663	predicted gene, 25663			53 bp downstream
Gm29170	predicted gene 29170			within coordinates
Rr396352	regulatory region 396352			1741 bp downstream
Rr396353	regulatory region 396353			747 bp downstream
Rr419944	regulatory region 419944			1463 bp distal
Rr419945	regulatory region 419945			1950 bp distal
Rr419946	regulatory region 419946			754 bp distal
Tssr9196	transcription start site region 9196			1788 bp downstream
Tssr9197	transcription start site region 9197			1770 bp downstream
Uchl5	ubiquitin carboxyl-terminal esterase L5			Intron
				Noncoding-Transcript-Variant