rs30980035 SNP Detail

Summary

• ID
  rs30980035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:107908665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATAAAT AATAAACCCT
  AAACAAAACA AAACTGCACA TTGAGAGTCT GGCCACCTGA CTCCATCACC AGCTTCTTAC
  TCGGATGCAA GGGCTATGTG GTTTCCTTGG TAGGAAAGAG AAATATTGGT TATGGATGGA
  TAGTATTGCT TCTAAACTTG TAATAGGATA GATAATACAA AAATCTATAT GGAATTATTA
  Y
  TTTCCTCAAG GGATCCTGCT GCTAGCACCA TACACATAAA AATTGATATT GTAGTATAAT
  AATTTATTTT AGAAAATCAG AAAGGCAAAA TTTAATAGCT ATAACCCCAT AACCCAGAAA
  TAACAATGTC TATATAAAAA CACCTAGAAT GGTATGTATG TATGTATGTC TTATTTATCT
  TTTGAAACAC CAGAGTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47504545	NES11220306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30980035					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47504545	NES11220306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107908665 () rs orientation: forward

Symbol	Name	Function Class
Cyb5b	cytochrome b5 type B	within coordinates
Rr669364	regulatory region 669364	803 bp proximal
Tssr79292	transcription start site region 79292	1066 bp upstream