rs30980038 SNP Detail

Summary

• ID
  rs30980038
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:107909597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATTTTT TTTTCTTTTT
  TAAGTTTTAT TTATTTATTA TTTATATGAG TATATTGTAG CTGTCTTCAG ACATACCAGA
  AGAGGGCATC AGATCCCATT TCAGATGGTT GGGAGCCACC ATGTGGTGGC TGGGAATTGA
  ACTCAGGACC TCTAGAAGAG CAGTCCCTGC TCTTAACCGC TGAGCCACCT CTCCAGTCCC
  W
  CATTCTGTTT TTGATGTGTT GTGGTGCTAG GGTTCAAAGT CAGAGCTTTA TGCATGATAA
  GATAAGATAG ATAGATAGAA AGTCCTCTAC CACTAAGCTA CATCCTTTTT TTTTTTTGAA
  TTTTTTTTTT TTTTTGAGAA GTGTCAACTG TGTGGCCTTG AACTCTCAAT AGATTTACGT
  GCTTTTGCCC CCCAGAGTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss47504548	NES11220260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30980038					SNP	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47504548	NES11220260	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107909597 () rs orientation: forward

Symbol	Name	Function Class
Cyb5b	cytochrome b5 type B	within coordinates
Rr669364	regulatory region 669364	108 bp distal
Tssr79292	transcription start site region 79292	134 bp upstream