rs30980087 SNP Detail

Summary

• ID
  rs30980087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143652712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA CAGAAAGCCT GCGTCGCACC
  R
  GGAATAGGAG GCGGCCCGAA AGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49689793	NES12979879	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30980087					SNP	A	G	A	A	A	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49689793	NES12979879	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143652712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi837	CpG island 837	within coordinates
Gm25663	predicted gene, 25663	1954 bp upstream
Gm29170	predicted gene 29170	668 bp upstream
Ro60	Ro60, Y RNA binding protein	within coordinates
Rr396352	regulatory region 396352	99 bp upstream
Rr396353	regulatory region 396353	1093 bp upstream
Rr419943	regulatory region 419943	within coordinates
Rr419944	regulatory region 419944	84 bp proximal
Rr419945	regulatory region 419945	170 bp proximal
Rr419946	regulatory region 419946	679 bp proximal
Tssr9196	transcription start site region 9196	289 bp upstream
Tssr9197	transcription start site region 9197	358 bp upstream
Tssr14094	transcription start site region 14094	within coordinates
Uchl5	ubiquitin carboxyl-terminal esterase L5	298 bp upstream