rs30980424 SNP Detail

Summary

• ID
  rs30980424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62009775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGACT TTCTTCCAGG
  AAACTTTCTC CGTCTCGTAT CTCACTTTGC AATCATGCAA AGGGAAAAGG GCTAATAAAG
  GTACATAGTA TGAGCTTGTC ATGGGGAAAT GCTTTTGACA GCTCACACGG GGAGCCATGC
  TTCGATAAAA AGGGCTGATA TAGCAAGATC ATGAGAGCTA AGGCAGGATG CTGGAATAGG
  R
  CCAGAAGGAA GGAGTCCGCA GAGATGTGGG GACGGGCTCC GAAACTGAAA TCCAGATAGC
  TGTGAGCTTG AGCGGGAATT GACAGATGTC AGTTACACAT CAGTGTCTGC CTTAGATTTT
  ACCTTGAAGT AGACTTCTCC CAGGGTCCTT GAGGTGGGAA ACTCATACAC AGCACACAGG
  AGTGATGAGG CATGAGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48004624	NES12068394	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30980424					SNP	G	G	G	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48004624	NES12068394	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62009775 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	375 bp distal
Rr313892	regulatory region 313892	within coordinates