rs30980426 SNP Detail

Summary

• ID
  rs30980426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62009891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCTCAC ACGGGGAGCC
  ATGCTTCGAT AAAAAGGGCT GATATAGCAA GATCATGAGA GCTAAGGCAG GATGCTGGAA
  TAGGGCCAGA AGGAAGGAGT CCGCAGAGAT GTGGGGACGG GCTCCGAAAC TGAAATCCAG
  ATAGCTGTGA GCTTGAGCGG GAATTGACAG ATGTCAGTTA CACATCAGTG TCTGCCTTAG
  R
  TTTTACCTTG AAGTAGACTT CTCCCAGGGT CCTTGAGGTG GGAAACTCAT ACACAGCACA
  CAGGAGTGAT GAGGCATGAG GTCAGGTTCT CTGCTAACAT GACACAGGGA CCAAATATTT
  TGTCCTGCAC CTCCAACTTT CTAAAACTCT CTGAATTTTT TTTCCCTTTG ATGAAACCTC
  AAACAAACCT GGCTTCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss48004626	NES12068396	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs30980426					SNP	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48004626	NES12068396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62009891 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	491 bp distal
Rr313892	regulatory region 313892	within coordinates