rs30980432 SNP Detail

Summary

• ID
  rs30980432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62011280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTCAGT TTCCTCCCTA
  GCATTGAGCC AGTGAGAATC CACACCCAGA CCTCTGCCTG CCACCCTAAT GCAGCTCTTG
  TTTACATAGG CCAGAGGTGC CCCTTCTCAT GGGTCTGCCA ATCCCCAAAT ACGGCCACAG
  CCAGAAAGTG AGAGGGTGCC CCTTATATAA GGCTCTGTGT GCTGGTCCCC AGACAATGCC
  R
  TTTCCTCGCC TGGCCATGTG TGACTGCATA ACACCCCTTG ACTCATTTCC TCTGGAAAAC
  TCGGCAGGGC CACTTTGCCC TGCTTCCTGC TTCTGTCACA CAGATTTCCT AGGAATACCA
  CCTCCCTGTG CTGCTTCGGG TGTCTGAGAT CTGAGTGGCA GGGAAGCTGC CTGAGGGTGC
  CCCTGAGCCG TCACGATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48004634	NES12068329	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30980432					SNP	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48004634	NES12068329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62011280 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	1880 bp distal
Rr313892	regulatory region 313892	within coordinates