rs30982265 SNP Detail

Summary

• ID
  rs30982265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113282936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC CACCGATTTT ACGCCAGACC
  Y
  CCCCTTTTGA CCAGGAAACA ACTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45984224	mCV22332094	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss133564247	ENSMUSSNP823728	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss321910477	CHEV_6_113255969	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30982265					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113282936 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1162 bp upstream
Cpgi17838	CpG island 17838	341 bp proximal
Cpne9	copine family member IX	404 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	within coordinates
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	397 bp upstream
Rr636483	regulatory region 636483	329 bp distal
Rr636484	regulatory region 636484	672 bp proximal
Rr636485	regulatory region 636485	1465 bp proximal
Rr636486	regulatory region 636486	1920 bp proximal
Tssr58189	transcription start site region 58189	975 bp upstream
Tssr58190	transcription start site region 58190	1185 bp upstream
Tssr58191	transcription start site region 58191	1264 bp upstream
Tssr58192	transcription start site region 58192	1866 bp upstream
Tssr58193	transcription start site region 58193	1892 bp upstream
Tssr62434	transcription start site region 62434	1792 bp downstream