rs30982620 SNP Detail

Summary

• ID
  rs30982620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:147181646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTCTTC AAGAGCAGCA
  CATGCTGATA ATTGCTGCCT TATATCTATC TCTATAATTC TGAGAGTATG CTATTTTGAA
  TACAACAAAT GCTTCTTCCT TAAAATTCTT TTTGATTATT TTTAATTGAC TTAAACAATC
  TACCACTTGT AAAAAAAAGA AATGGGTAAA CGAAACATTT TGGAACACTG AGATGATACA
  M
  CTTAAACTAC AGCTTAAAAG CATTTTGTTT GTTGATGTTT GATGTTTGCT TTAATGTATT
  TAATGTATAA TATAATATAT ATTTTTACTA CTATTCTTGA GAAAATTTCT TAGGAGCCTA
  GCAGCCTAGA AAAAATATAG ATTAATATAA GTTAATAATA AAAATAATTA TAAGATAATT
  TCAATATAAA TTAATATATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49690467	NES13079684	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	C		C	C	A	C
ss145669209	ENSMUSSNP2474838	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30982620					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49690467	NES13079684	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:147181646 () rs orientation: forward

Symbol	Name	Function Class
Rr420066	regulatory region 420066	267 bp distal