rs30982621 SNP Detail

Summary

• ID
  rs30982621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:147181024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAAAATAT AATTTAAAAA CGAGTTAAAG
  ATCAGAACAG ATAATTCTCA AATAAGTAGT GTAAATGCCC AGGGGTTTAT GAAAATATTC
  AATACTTTTA GGAAAGACAG ATAAGAAAAT TGAGATTCTC AGTTACTTAG ATGTGTATTA
  Y
  ATTAAAATAT AATGTGTAAT AAAATTAACA TGTACACTGT TGGTGTGGAG TAAAGTATAT
  CACAACCCTG AAAATCAGAA TAAATGTTTC AAAAATAAAA TAAAATAAAT GAACCAACAG
  ATGCAGTTGT TCTGTTCCTG AGGTATCTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49690468	NES13079688	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C		C	C	T		C
ss320022102	CHEV_1_149152416	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30982621					SNP	C	C	C	T	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49690468	NES13079688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:147181024 () rs orientation: forward

Symbol	Name	Function Class
Rr420066	regulatory region 420066	334 bp proximal