rs30982623 SNP Detail

Summary

• ID
  rs30982623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:147180761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACACATAAT TAAGTATTAG TTATATTTTT CATGCAATTA
  AGAATGAAAA CTTCTTAATT CAGATAAAAA CACAAAAGAA CAGGAACATT CAAAGATCCC
  R
  GAGTGATATT AGAAATGCTG AAGGCCTCAC AATGCCATAT AACTTATCAT GGAGCCATTG
  AAACCATCTA ACATAGAACA GATGCATAAA CTAATGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45033989	mCV24651589	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss49690470	NES13079686	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	G		G	A	G	A	G	G	A	G	G
ss145669206	ENSMUSSNP7087427	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30982623					SNP	A	A	G	A	G	G	G	G	G	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49690470	NES13079686	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:147180761 () rs orientation: forward

Symbol	Name	Function Class
Rr420066	regulatory region 420066	597 bp proximal