rs30982988 SNP Detail

Summary

• ID
  rs30982988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42111369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CTCCCATCTC ACGCCTGTTA
  Y
  ATCAGTCCTG ACCCTTGATG GTACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44983034	mCV24954870	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146410880	ENSMUSSNP286198	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325811624	CHEV_19_42197420	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30982988					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42111369 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	345 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	843 bp downstream
Rr547822	regulatory region 547822	383 bp distal