rs30983199 SNP Detail

Summary

• ID
  rs30983199
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146936322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATATTTA AATTCAGAAC
  ACAGACAATG AAAAATCACA TTAATATCTT ATACAGACAC ATGCAGTATG TCTCTAAAGG
  ATCAGAAGGT TTTAGGTAAA GACTGCTTCC CTGGAAAGAC ATTCATGTCA TCAAAAACAG
  AACTTCAGTG ATAATTTAGG TCATTCCTAA AGCATGAATT CTTCTCAACT GTGTAAGTTC
  W
  TGACATAAAT AAGAACACCG ATGGCTGACA GACCCAGTTT TAGCAAAGCA TGTGCATATC
  CCTAGGATAA ATTCCAGGCA CCATTCTATA AATTAATGAA AGATTGGAAA TCACTCTTAA
  GTTTTTAAAA ATAGAGCATA GTCAATTACA GGAAAAAAAG AAAACTGTCA AATCTGAATT
  AGAACACTGC TCCAAAAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49691545	NES12958881	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30983199					SNP	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49691545	NES12958881	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146936322 () rs orientation: forward

Symbol	Name	Function Class
Rr372196	regulatory region 372196	1088 bp upstream