rs30983574 SNP Detail

Summary

• ID
  rs30983574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170794486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA TAGACATGAT CAGATTTCAC
  R
  GCGACAGTAG TTCATGGCGC GCAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44983920	mCV24426925	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A	A
ss60345265	NES15845051	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	G		A	G	G		A	G	G	G		G
ss146149169	ENSMUSSNP6946499	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320115069	CHEV_1_172897048	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30983574					SNP	G	G	G	A	A	G	G	A	A	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345265	NES15845051	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170794486 () rs orientation: forward

Symbol	Name	Function Class
D1Mit147	DNA segment, Chr 1, Massachusetts Institute of Technology 147	1840 bp distal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	915 bp proximal
Rr372438	regulatory region 372438	66 bp upstream
Tssr14956	transcription start site region 14956	1106 bp upstream
Tssr14957	transcription start site region 14957	394 bp upstream
Tssr14958	transcription start site region 14958	1287 bp downstream