rs30984237 SNP Detail

Summary

• ID
  rs30984237
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149150103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTACAAG CTAAGGGATT
  GCTTTCAGAA ATAAGACGTA TATTGTACAA TCTATTAACC ACTTCCACAC ATTTTTAAAC
  CGAATATAAC CATTTGACTA TTGAAATCAT TCTTAAATAA CGATCTCCAC TGTGCTATAT
  ACATGGCAGG GTTTAAAGAG CCCCTTTACA GTAAAGTTTT CTAAAATACG ATTTAAATTT
  M
  AAAACAATAC CTACCAGCAC GTCTAACAAC AGTAACGGAA TCCAACTAAT TGCAACACTT
  CTGCATAGCC TAGTAATTTG TGAATTGTGC AGAATAAATC TATTTGACAG GCCAGTTAGC
  AATAGAGCCT CTAGCATGCT GCCATGCCGC AGAATGAAGT AAGAGCTACC GTTTTCTCGC
  TGATGTCAAA AACATTTCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45485600	mCV24053987	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss51052134	NES13892903	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		C	A	A	A		A	A	C		A
ss136071446	ENSMUSSNP1692642	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
ss321019001	CHEV_3_149107430	CHEVERUD	SCREENING_POP	f	SNP													A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30984237					SNP	C	C	A	A	A	C	A	A	C	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052134	NES13892903	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149150103 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1057 bp upstream
Rr587324	regulatory region 587324	317 bp proximal
Rr587325	regulatory region 587325	716 bp proximal
Tssr36100	transcription start site region 36100	720 bp downstream
Tssr36101	transcription start site region 36101	787 bp downstream
Tssr36102	transcription start site region 36102	801 bp downstream
Tssr36103	transcription start site region 36103	885 bp downstream
Tssr36104	transcription start site region 36104	910 bp downstream
Tssr36105	transcription start site region 36105	987 bp downstream