rs30984621 SNP Detail

Summary

• ID
  rs30984621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:147064304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAAATTA CCTTGCTCAT TCAGGTGATA
  TTTATTTACC AGCTATCTCC CTGAAACCTC TGACTGCTCT GCAAGTGCCA AGGCTTCAGA
  GTCCTTCCCT CTTTTGTTCA TCTCAGATCC ATAGTGTGCT GACGGATCCT TGGGATATTC
  K
  AGGCACTCTC AGAATGTGTG TGGATGACTA AATAAGAGAG TAAATGGCAA GGACTCAGTA
  AGTGATTGTT GGATAAGTAG AGAAATCACT GGGATGAATA AGGTCTCTTG ACTACATGGA
  GCTTAAATTA CAGCAAAGTG GTTTTGATCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49690970	NES13080192	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	T	G	G	G		T	G	G	T		T
ss320021281	CHEV_1_149035696	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30984621					SNP	G	G	G	G	T	G	T	G	G	G	G	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49690970	NES13080192	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:147064304 () rs orientation: forward

Symbol	Name	Function Class
Rr420063	regulatory region 420063	957 bp distal
Rr420064	regulatory region 420064	645 bp distal