rs30985278 SNP Detail

Summary

• ID
  rs30985278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105282289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTATGTTC GTTCTGCTCC TACCCAGCAG CCCTCTCTGC
  TACCTGCCAG TAATTTAGCA TCAGCCTGCC CTGATACTTT GGCAATGAAA AGATGGGAGA
  R
  AAACAGTCCT TCTTCCTCAG AAGGCCACTG CATGTGACCA ATGCCCGAAC TGAGCACTGG
  TCAAATATCT TATGAGCTTT ATGATTATTA ACTTTCCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44983559	mCV25150504	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss145082602	ENSMUSSNP7162687	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30985278					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105282289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	1222 bp proximal
Gm17634	predicted gene, 17634	1443 bp upstream
Rnf152	ring finger protein 152	within coordinates
Rr416387	regulatory region 416387	953 bp proximal
Rr416388	regulatory region 416388	1454 bp proximal
Rr416389	regulatory region 416389	1463 bp proximal
Rr416390	regulatory region 416390	1995 bp proximal
Tssr13126	transcription start site region 13126	1916 bp downstream