rs30986102 SNP Detail

Summary

• ID
  rs30986102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62007017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTCTG AGCATCCTTT
  CCTGGGCCAG CAATGACCTC AACAGCAGGA GGCCTAGCTG TGGGCAAAAA CGCCACCGTC
  CTGTTATTCA GTCCAGGAAC TGCATGTGAT AATTTCTGCC TTGGACTTCC CATTAACTGG
  CCCACTGAGG CCTCCTTCTC AGCACTGTTG GGAAGAGGCT ACAAGTGAGA CAGTCAGTGA
  Y
  GTCATGCAGT GATCACTGGC CTCTGCGTAG AGGCTAGGAA GATGTCCTGA AGGACTCCTG
  GATTCCCTCA CTGGCTTTGT CAGCTGGCAA CTCATCCTTT TCTGGCCTCA CTGCTTCTGT
  TTGCCCTGGA CCTTCTTCCT GGCTTATTCA TCCTTTTTCT CTCTGACCTG ACAAAAGGCT
  TCTCAAAGGC AATGTGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48004604	NES12068449	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30986102					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48004604	NES12068449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62007017 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	1984 bp proximal
Rr313891	regulatory region 313891	within coordinates
Rr313892	regulatory region 313892	1185 bp proximal