rs30986431 SNP Detail

Summary

• ID
  rs30986431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:147062916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGCAGTTT CACATGGGGC AAAAGAATCA
  TATTTCACTC AGAATCAATT CTAATTAAAA GAGACTAGGA AGGCACAAAA ATTTTGTATA
  CATTCTTAAT GTCAATATGT GCACATAAAG ATAGGATGCA TCAATTGTGA GAATAGAGAT
  R
  TTATTTTTTT TTGAAGTGTC AACATGTAAC ATCAATAAGC AAAGATGTAA AATATTATGT
  ATTTTGCTAA ACTTGAAATG AGTCTTACCA CTGTTGAAGG CTTTCAAATT AGCAATAAGA
  AAACAAGTTT CCTAGAAACC AGTACTCATT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49690990	NES13080228	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	A		G	A	A	G		G
ss320021272	CHEV_1_149034308	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30986431					SNP	A	A	A	A	G	A	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49690990	NES13080228	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:147062916 () rs orientation: forward

Symbol	Name	Function Class
Rr420063	regulatory region 420063	158 bp proximal
Rr420064	regulatory region 420064	540 bp proximal