GAGGCCTAGC TGTGGGCAAA AACGCCACCG TCCTGTTATT CAGTCCAGGA ACTGCATGTG ATAATTTCTG CCTTGGACTT CCCATTAACT GGCCCACTGA GGCCTCCTTC TCAGCACTGT TGGGAAGAGG CTACAAGTGA GACAGTCAGT GACGTCATGC AGTGATCACT GGCCTCTGCG TAGAGGCTAG GAAGATGTCC Y GAAGGACTCC TGGATTCCCT CACTGGCTTT GTCAGCTGGC AACTCATCCT TTTCTGGCCT CACTGCTTCT GTTTGCCCTG GACCTTCTTC CTGGCTTATT CATCCTTTTT CTCTCTGACC TGACAAAAGG CTTCTCAAAG GCAATGTGAA AATGCCACCT CCTCTTTGAA GCCCTCCTGG GTATCTGTGA GTGATACTGA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48004606 | NES12068451 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | T | T |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NZW/LacJ |
WSB/EiJ |
||||
rs30987084 | SNP | T | T | T | T | T | T | C | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48004606 | NES12068451 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr15:62007065 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Pvt1 | Pvt1 oncogene | within coordinates | ||||||
Rr303301 | regulatory region 303301 | 1936 bp proximal | ||||||
Rr313891 | regulatory region 313891 | within coordinates | ||||||
Rr313892 | regulatory region 313892 | 1137 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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