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rs30987085 SNP Detail
Summary
  • ID
    rs30987085
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:62007202 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAGACAGTC AGTGACGTCA
    TGCAGTGATC ACTGGCCTCT GCGTAGAGGC TAGGAAGATG TCCTGAAGGA CTCCTGGATT
    CCCTCACTGG CTTTGTCAGC TGGCAACTCA TCCTTTTCTG GCCTCACTGC TTCTGTTTGC
    CCTGGACCTT CTTCCTGGCT TATTCATCCT TTTTCTCTCT GACCTGACAA AAGGCTTCTC
    R
    AAGGCAATGT GAAAATGCCA CCTCCTCTTT GAAGCCCTCC TGGGTATCTG TGAGTGATAC
    TGAAGCTTTT CAGCAGAGCC CTGAAATGGA AGAGCCATGG GCTTGTCTTT ACTATGCTGC
    TGGGCATGGG TGGAGGGGGT GGAAGATGCT GTGGAGCAGA AAAACATGTT CTAGGGTCAG
    GTGGGGACTG TCTTAATTAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss48004608 NES12068453 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30987085 SNP A A A A A A G A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48004608 NES12068453 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:62007202 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pvt1 Pvt1 oncogene within coordinates
Rr303301 regulatory region 303301 1799 bp proximal
Rr313891 regulatory region 313891 within coordinates
Rr313892 regulatory region 313892 1000 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory