About   Help   FAQ
rs30987087 SNP Detail
Summary
  • ID
    rs30987087
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:62007299 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCTGGCAAC TCATCCTTTT
    CTGGCCTCAC TGCTTCTGTT TGCCCTGGAC CTTCTTCCTG GCTTATTCAT CCTTTTTCTC
    TCTGACCTGA CAAAAGGCTT CTCAAAGGCA ATGTGAAAAT GCCACCTCCT CTTTGAAGCC
    CTCCTGGGTA TCTGTGAGTG ATACTGAAGC TTTTCAGCAG AGCCCTGAAA TGGAAGAGCC
    R
    TGGGCTTGTC TTTACTATGC TGCTGGGCAT GGGTGGAGGG GGTGGAAGAT GCTGTGGAGC
    AGAAAAACAT GTTCTAGGGT CAGGTGGGGA CTGTCTTAAT TAGGGTTTCC ATTGCTGTGA
    TGAGATACAA TGACCAAGGC AACTCTTATA AGAACAGCAG TTAATTGTGG CTGGCTTATA
    GGTTCAGAGG TTCAGCCCAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss48004610 NES12068455 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30987087 SNP A A A A A A G A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48004610 NES12068455 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:62007299 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pvt1 Pvt1 oncogene within coordinates
Rr303301 regulatory region 303301 1702 bp proximal
Rr313891 regulatory region 313891 within coordinates
Rr313892 regulatory region 313892 903 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory