rs30987239 SNP Detail

Summary

• ID
  rs30987239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31217538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCTCCA GGTTCACTTG
  GGGCTCCCTG GCCGCCACGT GCAAGCCCAG ACTCCCCTGG CTAATCCCGG CTCGAAAGCG
  TCGCTTTCCT TACCTCTCAT CCCTTAGCCT CTGGAACTTC GATCTGCTCT TTTACTTTGA
  AATCTCTTCT CCCAAACCAA ACCTCTGATT GCTGCCAACT ATTCTTTTAC TTTACAGTCT
  Y
  AAATACCACT TCAGAAAGTC ATAGCCCCTT TATTTCAAAT TCCCCTTCCC AGCCCTTAAG
  CCAAACTTTT CTCCTTTAGT AGCGATGCCC ATTTCTCCTC CCTTGTGTCC CCGTTCTCTT
  TGTCGAATTC TTCCATCAGG GCTCTTGCCC TGGAAAAGTC TTCCGTTTGC TACGAGTGTC
  GTTTACTTCA TTCCTTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39241628	mCV24421434	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss52709800	NES15559269	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	T	C		C	T	C	C
ss139235049	ENSMUSSNP4583444	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C											C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30987239					SNP	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709800	NES15559269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31217538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	within coordinates
Eaf1	ELL associated factor 1	within coordinates
Gm63056	predicted gene, 63056	1315 bp upstream
Mettl6	methyltransferase 6, methylcytidine	541 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	1214 bp downstream
Tssr124944	transcription start site region 124944	486 bp downstream
Tssr124945	transcription start site region 124945	400 bp downstream
Tssr124946	transcription start site region 124946	836 bp upstream
Tssr127965	transcription start site region 127965	1316 bp upstream
Tssr127966	transcription start site region 127966	596 bp upstream
Tssr127967	transcription start site region 127967	527 bp upstream