rs30987877 SNP Detail

Summary

• ID
  rs30987877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:62009527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGCCTG GCAAGGCATG
  AAAGGTCCTT TGAAGCTAAA CTGTGAGGGT TTTCTTTCCT CCTTTTTTAT TTGTAAGCAA
  AGCTGGCATG GGCGGATGAT GCTGGGCTCT ACTTGGCTGG AGAGCAACTA GTGGCTCTCA
  AGACCAGCAG ACTGCCCCAT CCCTCCCTAA GCCATAAACC ACCAACCTCC ATCTTGCCTC
  R
  TCCCACTAGA AATGATGAAA CGGAGGTTGT TATCACCCTT GACATAGATG AAGGACTTTC
  TTCCAGGAAA CTTTCTCCGT CTCGTATCTC ACTTTGCAAT CATGCAAAGG GAAAAGGGCT
  AATAAAGGTA CATAGTATGA GCTTGTCATG GGGAAATGCT TTTGACAGCT CACACGGGGA
  GCCATGCTTC GATAAAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss48004620	NES12068392	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs30987877					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48004620	NES12068392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:62009527 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr303301	regulatory region 303301	127 bp distal
Rr313891	regulatory region 313891	1928 bp distal
Rr313892	regulatory region 313892	within coordinates