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rs30987879 SNP Detail
Summary
  • ID
    rs30987879
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:62009558 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAGCTAAAC TGTGAGGGTT
    TTCTTTCCTC CTTTTTTATT TGTAAGCAAA GCTGGCATGG GCGGATGATG CTGGGCTCTA
    CTTGGCTGGA GAGCAACTAG TGGCTCTCAA GACCAGCAGA CTGCCCCATC CCTCCCTAAG
    CCATAAACCA CCAACCTCCA TCTTGCCTCG TCCCACTAGA AATGATGAAA CGGAGGTTGT
    Y
    ATCACCCTTG ACATAGATGA AGGACTTTCT TCCAGGAAAC TTTCTCCGTC TCGTATCTCA
    CTTTGCAATC ATGCAAAGGG AAAAGGGCTA ATAAAGGTAC ATAGTATGAG CTTGTCATGG
    GGAAATGCTT TTGACAGCTC ACACGGGGAG CCATGCTTCG ATAAAAAGGG CTGATATAGC
    AAGATCATGA GAGCTAAGGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
KK/HlJ
NZW/LacJ
ss48004622 NES12068393 PERLEGEN MM_PANEL2 f SNP T T T T T C T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
KK/HlJ
NZW/LacJ
rs30987879 SNP T T T T T C T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48004622 NES12068393 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:62009558 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pvt1 Pvt1 oncogene within coordinates
Rr303301 regulatory region 303301 158 bp distal
Rr313891 regulatory region 313891 1959 bp distal
Rr313892 regulatory region 313892 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory