rs30988116 SNP Detail

Summary

• ID
  rs30988116
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:108409848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTAAGGC ATTCCGTTTG
  ATTTGGTAAG ATTTCTTTAA AAACATATTT ACCTTTAAAT TTTTACCTGT GTTTCTGTAG
  GTGCACCGTG TGTGTGCCGA GCCTGTGGAA GCCAGAAGAG AGGGTTAGAT CTGCTGAAAC
  TGGAGTTACA GACAACTGTG AGTTTCCATG TGGGTGCTGG GATCTGAACC CAGGACTCTA
  S
  AAGAGCAGCG CATGCTCTAA ACTGCTATGC CATTGCTCTG GCCCTGGTAA CTTCTCCTAG
  AGTAGAAACC ATCTTTCTAC CGCATGTGTA CACATCTCTC CAGCAATACA AGTTCTTCGA
  CCTGGGTATT CTGTATAGAC ACATGAAGAA CAATGAAATA GTATAAAGAT ACTTAATAAG
  TGTTAGCTTA CAGACCATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47505427	NES11215038	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30988116					SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47505427	NES11215038	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:108409848 () rs orientation: forward

Symbol	Name	Function Class
Gm64294	predicted gene, 64294	939 bp upstream
Tssr82809	transcription start site region 82809	965 bp upstream