rs30988122 SNP Detail

Summary

• ID
  rs30988122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:108410370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCTCTC TCTCTCCTTC
  TCTATCCTCC CTTCTCTGCC CTCATGGGTC TTCTCCTGTC TGCCTGCCTC TACCTCTTCT
  CTAGTCTCTC ACTCCTCTCC CTTCCCCCTT TGTACCAAAT CTGTTGTCTG GTGTTATTTC
  TCAGGGGACA CCTTGGTGTG GGCCTGCCAG GCACCCCCTG GCCATCTTAT ATATTTCATA
  R
  CAATAAGTAC ACAGTGAGGT TTGACATGTG TAAAGAGAAT CTCTGGTGCG TTGTGTGGAA
  GCATCACCTG TCAATGCGAT GCTGTTGGCC TGTCAGCTTA TGCAGGAAAT AGGAAAGTGG
  GTGTTCTGGT AAAGAGAGGG GATTTCTGGG ACAGATTCAG GAGTAGAAGG ATTTGACCTG
  AACTCTGAGG AAGAGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47505433	NES11215041	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30988122					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47505433	NES11215041	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:108410370 () rs orientation: forward

Symbol	Name	Function Class
Gm64294	predicted gene, 64294	1461 bp upstream
Rr669470	regulatory region 669470	1089 bp proximal
Rr669471	regulatory region 669471	1603 bp proximal
Tssr82809	transcription start site region 82809	1487 bp upstream