rs30988276 SNP Detail

Summary

• ID
  rs30988276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95859715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCA CAGCTGAAGG TAGTTTGTCA
  R
  AAGTATCAAA GTAAAATCAT CCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45486309	mCV25061979	ABI	CRAMUS_MOUSE	f	SNP	G	G						A		A
ss46778195	NES10734246	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		G	A	G			G		G
ss135513200	ENSMUSSNP6593450	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A			G
ss320841256	CHEV_3_95756326	CHEVERUD	SCREENING_POP	f	SNP												A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30988276					SNP	G	G	G	A	G	A	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778195	NES10734246	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95859715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	913 bp distal
Gm56819	predicted gene, 56819	1112 bp upstream
Gm65572	predicted gene, 65572	717 bp downstream
Rr375411	regulatory region 375411	515 bp downstream
Rr581095	regulatory region 581095	1123 bp distal
Rr581096	regulatory region 581096	1065 bp distal
Rr581097	regulatory region 581097	419 bp distal
Rr581098	regulatory region 581098	695 bp proximal
Rr581099	regulatory region 581099	1726 bp proximal
Tssr30663	transcription start site region 30663	1317 bp downstream
Tssr30664	transcription start site region 30664	1036 bp downstream
Tssr34570	transcription start site region 34570	1367 bp upstream