rs30988695 SNP Detail

Summary

• ID
  rs30988695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:108410385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTCTAT CCTCCCTTCT
  CTGCCCTCAT GGGTCTTCTC CTGTCTGCCT GCCTCTACCT CTTCTCTAGT CTCTCACTCC
  TCTCCCTTCC CCCTTTGTAC CAAATCTGTT GTCTGGTGTT ATTTCTCAGG GGACACCTTG
  GTGTGGGCCT GCCAGGCACC CCCTGGCCAT CTTATATATT TCATAACAAT AAGTACACAG
  Y
  GAGGTTTGAC ATGTGTAAAG AGAATCTCTG GTGCGTTGTG TGGAAGCATC ACCTGTCAAT
  GCGATGCTGT TGGCCTGTCA GCTTATGCAG GAAATAGGAA AGTGGGTGTT CTGGTAAAGA
  GAGGGGATTT CTGGGACAGA TTCAGGAGTA GAAGGATTTG ACCTGAACTC TGAGGAAGAG
  GGTCACGTGA AACCAAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47505436	NES11215043	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30988695					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47505436	NES11215043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:108410385 () rs orientation: forward

Symbol	Name	Function Class
Gm64294	predicted gene, 64294	1476 bp upstream
Rr669470	regulatory region 669470	1074 bp proximal
Rr669471	regulatory region 669471	1588 bp proximal
Tssr82809	transcription start site region 82809	1502 bp upstream