rs30988982 SNP Detail

Summary

• ID
  rs30988982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95559772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA CCACAGCATC AGGTGGGACT
  Y
  CTAGGGCTTG GGAAATGGCT TCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45485957	mCV23592583	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30988982					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95559772 () rs orientation: forward

Symbol	Name	Function Class
Gm64625	predicted gene, 64625	836 bp downstream
Gm65002	predicted gene, 65002	1410 bp upstream
Rr366848	regulatory region 366848	within coordinates
Rr580997	regulatory region 580997	1645 bp distal
Rr580998	regulatory region 580998	114 bp distal
Rr580999	regulatory region 580999	1353 bp proximal
Rr581000	regulatory region 581000	1421 bp proximal
Tssr971	transcription start site region 971	1314 bp downstream
Tssr30615	transcription start site region 30615	1574 bp downstream
Tssr30616	transcription start site region 30616	1555 bp downstream
Tssr30617	transcription start site region 30617	1524 bp downstream
Tssr30618	transcription start site region 30618	950 bp downstream
Tssr30619	transcription start site region 30619	662 bp downstream
Tssr30620	transcription start site region 30620	1289 bp upstream
Tssr30621	transcription start site region 30621	1435 bp upstream
Tssr30622	transcription start site region 30622	1456 bp upstream
Tssr30623	transcription start site region 30623	1469 bp upstream
Tssr34502	transcription start site region 34502	1935 bp upstream
Tssr34503	transcription start site region 34503	1120 bp upstream
Tssr34504	transcription start site region 34504	447 bp upstream
Tssr34505	transcription start site region 34505	52 bp upstream
Tssr34506	transcription start site region 34506	1257 bp downstream