rs30989688 SNP Detail

Summary

• ID
  rs30989688
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17812265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA TAGGATACTA ACATGTTTAC
  W
  TGTTTAAAAT GGATGAGAGA GGAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44984783	mCV23246985	ABI	CRAMUS_MOUSE	f	SNP		A	A	T
ss146130606	ENSMUSSNP400514	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30989688					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17812265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	897 bp proximal
Cpgi10666	CpG island 10666	1592 bp proximal
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	644 bp proximal