rs30989848 SNP Detail

Summary

• ID
  rs30989848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT GTTAAGGTTT GCTTAGGTAC
  R
  GTTTGCAGAT AGGTGAACTT GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45486502	mCV24793263	ABI	CRAMUS_MOUSE	f	SNP		A				A		G
ss60435739	NES15935096	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A		G		A		A	G		A
ss135675018	ENSMUSSNP3517870	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320896721	CHEV_3_116608196	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30989848					SNP	G	A	A	A	A	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435739	NES15935096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698927 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			845 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			778 bp distal
Rr583801	regulatory region 583801			1137 bp distal
Rr583802	regulatory region 583802			896 bp distal
Rr583803	regulatory region 583803			690 bp proximal
Tssr31391	transcription start site region 31391			1672 bp downstream
Tssr31392	transcription start site region 31392			1590 bp downstream
Tssr31393	transcription start site region 31393			1563 bp downstream
Tssr31394	transcription start site region 31394			1526 bp downstream
Tssr31395	transcription start site region 31395			880 bp downstream
Tssr31396	transcription start site region 31396			1095 bp upstream