rs30989934 SNP Detail

Summary

• ID
  rs30989934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70313142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGCGTGA GGCCCGGGGA
  TCCTCTCTTC CTTCTTGTCA ACACTCCCAC TCCCCCTGAG AGATGCAAGT TCCCCCAACC
  CCGACTCTCC AGCGGGGGCC GCGGGATTCA CCGCGCCCAC GCGGCCACTG AGGAGGGAAT
  CCTCCCCCGC CAACCCGGTG TGATTCGGGG TCGCGCCTCC GTGCTCCCTC CCTCTCCTCC
  Y
  CCTCGCTCTC AGCCAGGCTG CGCGCTTCAG GAGCAGGCCT CGGGGAACAC ATCACCCACC
  CCCGGGATCC GCTGTCGAGG TGACAGCACC CTGGGTCGGC ACAGGGGGCC GCCCTTGACT
  GCAAGGCACC CTCAGGCAGC AATGAGGACA ACCCTGCGGG AGACAGAGAG TAGAGACTGG
  AGGAGACCGC CTTGGTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39242130	mCV25163974	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss139680482	ENSMUSSNP5370052	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30989934					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70313142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	within coordinates
Cpgi6681	CpG island 6681	919 bp proximal
Egr3	early growth response 3	1624 bp upstream
Gm63137	predicted gene, 63137	within coordinates
Rr404186	regulatory region 404186	1047 bp upstream
Rr494833	regulatory region 494833	575 bp distal
Rr494834	regulatory region 494834	835 bp distal
Rr494835	regulatory region 494835	within coordinates
Rr494836	regulatory region 494836	1020 bp proximal
Tssr126385	transcription start site region 126385	526 bp downstream
Tssr126386	transcription start site region 126386	494 bp downstream
Tssr126387	transcription start site region 126387	1214 bp upstream
Tssr126388	transcription start site region 126388	1233 bp upstream
Tssr126389	transcription start site region 126389	1475 bp upstream
Tssr126390	transcription start site region 126390	1513 bp upstream
Tssr126391	transcription start site region 126391	1613 bp upstream
Tssr126392	transcription start site region 126392	1682 bp upstream