rs30990147 SNP Detail

Summary

• ID
  rs30990147
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118573851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTTTCTGA GACGTCTGAG GGTAGGTCTG AATTTCCACC
  ATCACTGTGA CTCTCCACTG TCCACTGCTC AGATGTGATA CGTTTGTTGA AAAGAATGGG
  W
  CCCTTTGGGA CCAAATGGTG GGAATGTCCA TCCCGGGATG ACAGAGAGGA TGGGTTGGAG
  GTGCCAGATC ATACACAGGG GAAACTAGTT TCCTTCCTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45985399	mCV27570003	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss133584375	ENSMUSSNP2218343	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss321925397	CHEV_6_118546908	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30990147					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118573851 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	within coordinates
Gm38887	predicted gene, 38887	within coordinates