rs30990971 SNP Detail

Summary

• ID
  rs30990971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:108406961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCATCT TGCCTCACCT
  TTCTACCAAG GATGAACACT GATGGTGAGG AGAAACTTCC TTTCTAGGGC TCCAGTTGTC
  GCACATGAGT ATCTGCTAAA AAAAAAAAAA GTCATCTCAG TGGCACCCAG CACTGGGCAG
  GAAGAGACAG AAGGATCATG AATTTGAGCC ATTGTGTCAC AGCGAGACTC TGTGACACAA
  K
  GGCTCTGACC AGTTCTTCCT TCCTTGCTTT GGAAGAGGGT ATATATTGTA TATGTCCCTA
  GCTCTCTCTA GAAATCTCGC CTCTCTTTGG ACTTCAGGAG TCTTGGTTGT ATTATGACCT
  CAGCTCTCTG ATGGCTTCAG GAACTACTTA GGATTTTGTA GATACTCTTC TCTTGTGTCC
  TCTTGATGGC ATTCAACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47505382	NES11215003	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30990971					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47505382	NES11215003	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:108406961 () rs orientation: forward

Symbol	Name	Function Class
Gm64294	predicted gene, 64294	within coordinates
Tssr82809	transcription start site region 82809	1899 bp downstream