rs30991580 SNP Detail

Summary

• ID
  rs30991580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161803038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACTGTT TGTCACTTCA
  ATTCAGTTCT CTAGCCAGTC TCAACTTTAG AGCACACAGA AATGGTGTGG GCAGTATATT
  AACAACTCAG ATTTCTAAAG TAAATATTGT TTTCGGGAGG AAACACCAGG GGAAAAAAGT
  TCAATAGTAT TGTTAATTAT GTCTCAACCT GTCAAATATT TGTTTACATA AAAAGCCACT
  R
  CCCTTCTGCT ATTTTGCTTC TCTCCTTGAG CTCTGCTTGT CATTTGTTCT ACATTAAAGG
  GAAGGTTGGA GAGGGGTGGT GTGAGAGCAA AGATAGGAGG AAGAGGAGGA GGAGGGGAGG
  AGGAGGGAGA AGAGGAGGGA GGGAGGAGGG AGGGGAGGAG GAAGAAGAGG TAGGAGGGAG
  GAGAGGGGAG GAGGGAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44984506	mCV24531158	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145926274	ENSMUSSNP3507059	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30991580					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161803038 () rs orientation: forward

Symbol	Name	Function Class
4930558K02Rik	RIKEN cDNA 4930558K02 gene	Intron
Gm38304	predicted gene, 38304	within coordinates
Rr396470	regulatory region 396470	974 bp upstream
Rr421879	regulatory region 421879	455 bp proximal
Rr421880	regulatory region 421880	1065 bp proximal
Rr421881	regulatory region 421881	1131 bp proximal