rs30993655 SNP Detail

Summary

• ID
  rs30993655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7473080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTC CTGTGCAGCT TTTACATGCG
  Y
  GAGGGGATGT ATGGGTGAAA AACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss44984331	mCV23214222	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs30993655					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7473080 () rs orientation: forward

Symbol	Name	Function Class
Atl3	atlastin GTPase 3	within coordinates
Cpgi10560	CpG island 10560	640 bp distal
Gm58988	predicted gene, 58988	841 bp upstream
Rr543689	regulatory region 543689	1652 bp distal
Rr543690	regulatory region 543690	1267 bp distal
Rr543691	regulatory region 543691	351 bp distal
Rr543692	regulatory region 543692	773 bp distal
Tssr154754	transcription start site region 154754	1684 bp downstream
Tssr154755	transcription start site region 154755	1647 bp downstream
Tssr154756	transcription start site region 154756	1451 bp downstream
Tssr154757	transcription start site region 154757	1253 bp downstream
Tssr154758	transcription start site region 154758	1241 bp downstream
Tssr154759	transcription start site region 154759	1209 bp downstream
Tssr154760	transcription start site region 154760	1117 bp downstream