rs30994149 SNP Detail

Summary

• ID
  rs30994149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3684203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCACAGTCCA GTATTACATT TCTGTTTGTT CTAGGGTTTT GGTCTTTCTT TTTCCTTCCA
  TTATTATTAT ATTTTTAAAT GGAACATATC TCACTTTGTC ACTATATAAT TTGAGTTGGC
  TTTGAATTTC CATTCTTCCT GCCTCTGCCT CTAAAATATT AAAATTAGAA GTGTGAGTCA
  TCAGGCCCAG TTCAGTGTGT GAACTCCTCC TCTTTCTCTT TCTTTCTTCC TTCCTTTCTT
  TCTTCCTTCC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT
  Y
  CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT TCCTTCCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTTT CTCTCTCTCT CTCTGATATA TACACAAAAG
  ATAGGAACAC TTGATCAAGC TCTCTCACAT AGCTAACTAT GAACAGAAGT TACTTTTACT
  AATCTGTTTA CTTTTCAACA TATTTTCACT TTCTCTGTAC TTAAGAAATG GTGTCTTGTC
  TCTACTGAAA CCAATATTGT GGGGAATAGA TAAATACAAC ATTACTATGA AATTCTCCAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45486749	mCV24832564	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30994149					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3684203 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	63 bp distal