rs30994744 SNP Detail

Summary

• ID
  rs30994744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTACTA ACAAAGGTTT
  CATTCATAGT TAAAATTTAA ATATACATTT TACTCTAAAA CCTGCTAAAC TCTTTCTTCA
  TCTGGCAGGA CACGCAGCAC AAGCCTGTCT GTGTGAGGTG AGGGCACAGC TGTTGGCACT
  GGTGCCGGCT CAGCTTGTCA GGCTTGGTGC CAAGGACTTT GCCTGATCAA CTGTGCCACC
  R
  GCCCCTGTAT TTAGTCTTCA GTTAAAGAAA CCAGTAAGAA CAAAACTTGC TTAGAGACAT
  ATTTACCTTC CGTGCTTTCA CAATTAAAGC TGACAAAATT TTCCTTCCAC TTTCAGCAAG
  GAATGACCTG TTGTCTGCTT CTGCAAGGAT TAGCTGAAAA ACACCAGTCC ACAGTGTGAA
  AATGAGTGAT GTCCCGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45487051	mCV24027915	ABI	CRAMUS_MOUSE	f	SNP	G	G	A						G
ss51060134	NES13425266	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	A	G	G	G	A	G	G	A	G
ss136101765	ENSMUSSNP5711123	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30994744					SNP	G	G	A	G	A	G	A	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060134	NES13425266	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994626 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587515	regulatory region 587515	935 bp distal
Rr587516	regulatory region 587516	within coordinates
Tssr32405	transcription start site region 32405	1337 bp upstream