rs30995565 SNP Detail

Summary

• ID
  rs30995565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129852762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCC CTGAAACTGT TAAACATTGA
  Y
  TTACAATGTT AACAAACAAA ACAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45487062	mCV24295825	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss320964114	CHEV_3_129762031	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30995565					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129852762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	791 bp proximal
Rr585124	regulatory region 585124	458 bp proximal
Rr585125	regulatory region 585125	1758 bp proximal
Rr585126	regulatory region 585126	1784 bp proximal
Sec24b	SEC24 homolog B, COPII coat complex component	within coordinates
Tssr31665	transcription start site region 31665	1654 bp upstream
Tssr35653	transcription start site region 35653	1560 bp downstream
Tssr35654	transcription start site region 35654	1622 bp downstream
Tssr35655	transcription start site region 35655	1697 bp downstream
Tssr35656	transcription start site region 35656	1725 bp downstream
Tssr35657	transcription start site region 35657	1737 bp downstream
Tssr35658	transcription start site region 35658	1906 bp downstream