rs30996162 SNP Detail

Summary

• ID
  rs30996162
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76191977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT CATTCTACTG AGAGTCTTCA
  W
  ACACTCAGTT TTTATATTTC CTTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39243109	mCV24548352	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss139753347	ENSMUSSNP5829113	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30996162					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76191977 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f2	general transcription factor IIF, polypeptide 2	within coordinates
Kctd4	potassium channel tetramerisation domain containing 4	466 bp upstream
Rr296312	regulatory region 296312	258 bp proximal
Rr389861	regulatory region 389861	within coordinates
Tssr126694	transcription start site region 126694	474 bp upstream
Tssr126695	transcription start site region 126695	513 bp upstream