rs30996462 SNP Detail

Summary

• ID
  rs30996462
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40577756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTCCGGTGT AATTTCCCCA TCACACGCAG TGTGCAGGGA
  AGGTGTGAAA GAGAAGTCTC TAGAACCTTC CAGTATTAAA ACAAGACACT TCCCCCCCCC
  M
  AAAAAAATAG ATAATCGTAA GATGGACTAA TTCCATATGA TTCAGGAGCT GCATCAACAG
  CTTTGCTGTA GAGGATTCCA AATCAGCAAA TACAAATTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45487995	mCV22725090	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss135039603	ENSMUSSNP3621841	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss320728259	CHEV_3_40422529	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30996462					SNP	C	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40577756 () rs orientation: forward

Symbol	Name	Function Class
1700017G19Rik	RIKEN cDNA 1700017G19 gene	695 bp upstream
Rr575827	regulatory region 575827	within coordinates
Rr575828	regulatory region 575828	113 bp proximal
Rr575829	regulatory region 575829	1676 bp proximal
Rr575830	regulatory region 575830	1932 bp proximal
Tssr33066	transcription start site region 33066	689 bp upstream