rs30996890 SNP Detail

Summary

• ID
  rs30996890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:29981039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCCCCACC CAAAAAAAAC CCCCAAAAAA CAAAAACCAG
  CAACAACAAA AAAACCCAAC TGATTGATCA CCCAGACTCG GAACTGTAAG CTACAACCCT
  R
  AACATTTCCG GGGCCAGTTT ATATAGGGGG AAAAGGCATA ATGATCTGAT AAGTAGGTGC
  AGGGAGAGCT GCAGCGTGGT TGGCCTTCTC CTAAGTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46467022	mCV22974583	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss148672356	ENSMUSSNP3924973	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss322132955	CHEV_7_31066633	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30996890					SNP	A	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29981039 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020L13Rik	RIKEN cDNA 1700020L13 gene			Intron
				Noncoding-Transcript-Variant
Cpgi18786	CpG island 18786			594 bp distal
Rr400235	regulatory region 400235			1047 bp downstream
Rr644765	regulatory region 644765			1505 bp distal
Rr644766	regulatory region 644766			1550 bp distal
Rr644767	regulatory region 644767			717 bp distal
Rr644768	regulatory region 644768			192 bp distal
Rr644769	regulatory region 644769			231 bp proximal
Rr644770	regulatory region 644770			622 bp proximal
Tssr65667	transcription start site region 65667			1472 bp downstream
Tssr65668	transcription start site region 65668			1426 bp downstream
Tssr65669	transcription start site region 65669			1030 bp downstream
Tssr71721	transcription start site region 71721			1190 bp upstream
Wdr62	WD repeat domain 62			1195 bp upstream