rs30997305 SNP Detail

Summary

• ID
  rs30997305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95859934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTA GCACAAAGCT AGTGGTTTGG
  Y
  CCCTGCTATT TGAAGAAGGA GAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45487998	mCV25061980	ABI	CRAMUS_MOUSE	f	SNP	C	C						T		T
ss46778207	NES10734250	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T	C		T	T	C	T		T	T	T		T
ss320841257	CHEV_3_95756545	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30997305					SNP	C	C	C	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778207	NES10734250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95859934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	1132 bp distal
Gm56819	predicted gene, 56819	1331 bp upstream
Gm65572	predicted gene, 65572	936 bp downstream
Rr375411	regulatory region 375411	734 bp downstream
Rr581095	regulatory region 581095	1342 bp distal
Rr581096	regulatory region 581096	1284 bp distal
Rr581097	regulatory region 581097	638 bp distal
Rr581098	regulatory region 581098	476 bp proximal
Rr581099	regulatory region 581099	1507 bp proximal
Tssr30663	transcription start site region 30663	1536 bp downstream
Tssr30664	transcription start site region 30664	1255 bp downstream
Tssr34570	transcription start site region 34570	1586 bp upstream