rs30997311 SNP Detail

Summary

• ID
  rs30997311
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115434947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATACTC CTGCAAGTAA
  CACCAATAAA AAAGCCATTG GTTCACCAAA CTTTGATGTG TTGTTCATTC CCTGTCTGGG
  TTATATAGAT ATTCAGATCT CTACCAATAA AATAAATAAA TAAATAAATA AATAAATAAA
  GCCTGTCACC CAGCAATCTT TTGTTAGTGT CCTTCCACCC CCAAATATTC CTCCCATTGT
  M
  TTCTTTCTCT CTTCCTTTCT ATTAGTTGAA TCTATTTCCT GACAGTTTCA TACAAGTACA
  TAGTTCATTT GGTTACTTGC ATCCCTTCCA CCCTCTCTTA CTCTCCCATC CCTCCCTCTC
  CTCCGTACAA GTCCCTTACC AGCTCCTGGT ATATTGTTCT GTTTTGTGAA CCACTGATTT
  TAACCAGGGC TATCTGTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45488005	mCV24998083	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss135663614	ENSMUSSNP2001210	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30997311					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115434947 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	within coordinates
Rr65099	regulatory region 65099	147 bp distal
Rr367536	regulatory region 367536	1031 bp upstream
Rr367537	regulatory region 367537	1430 bp upstream
Tssr35264	transcription start site region 35264	212 bp downstream
Tssr35265	transcription start site region 35265	245 bp downstream