rs30997525 SNP Detail

Summary

• ID
  rs30997525
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78871419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCCTCC ATCTAATTGG
  CCTGTGGAAT GTCTCTGGGC ATTTTCTTGA TTTCTAATTG ATGTAGGAGG GCCCAGGCCA
  CTGTGGTCCT TAGATAGGTG GGTGTGAATT GTATTAGAAA GGGAGATGAT CACGCCAGTA
  CACCCATCTC TGCTTCAGTT CCTGCCTCCA GGTTCTTCCC TTGAGTCTCT CTCTGCCTTG
  S
  ATTCTCTGGA CGATGGTTTG GTGAAACAAG CCCACTCCTT CCCAAGTTGC TTTCGGACAT
  GGTGTTTATC ACAGCAACAG AGACATGGAT AGCAAGCTAC CATCTGGGGG CAGAAGCTGA
  AATATTATCA CCAGGGAAGG GGAGTGGATG CCATTTAAGA TACTAATGAG AGTATCTGGC
  TCAGAGATAG AGGCGGTATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45487775	mCV24563850	ABI	CRAMUS_MOUSE	f	SNP		G	C					C	C
ss60421444	NES15923005	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	C	G	C	G	G	G
ss135365525	ENSMUSSNP6585053	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30997525					SNP	G	G	C	C	C	C	C	C	C	C	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421444	NES15923005	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78871419 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	1342 bp downstream
Rr578452	regulatory region 578452	284 bp proximal