rs30998092 SNP Detail

Summary

• ID
  rs30998092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101249545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAATGAAA ACCCGAGAGT GGAAGGTGCA GGGGGCTCCT
  GCCAGAGAGT GACTTTCATG CAGCCAGAAG AGGCTGTTTA TCATCCATCT TGTCAAGATG
  Y
  GTTGTGGTGT GGATCCTGAC TGTCCCCTAA GGCCCCTGTG GCAGAAGTTT GATGTTCACC
  TTGGCACAAT TGGTATGTTG TGGAAATCTT TAAGCCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45488016	mCV23815954	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss46813721	NES10712528	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	T	T		C	T		C
ss135546649	ENSMUSSNP1762190	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320851889	CHEV_3_101146152	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30998092					SNP	T	T	C	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813721	NES10712528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101249545 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582012	regulatory region 582012	445 bp proximal
Rr582013	regulatory region 582013	1232 bp proximal
Rr582014	regulatory region 582014	1975 bp proximal