rs30998390 SNP Detail

Summary

• ID
  rs30998390
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82939436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TACTAAAAAC CATGAGCTTG
  W
  ATGAGCTTAT CCAAGCTGGC AAACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45986491	mCV23178336	ABI	CRAMUS_MOUSE	f	SNP		T						A
ss60904312	NES15955838	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	A	T	A	T		T	T	T	T		T
ss133345803	ENSMUSSNP1469518	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						A
ss321843754	CHEV_6_82912449	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30998390					SNP	A	T	T	T	T	A	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904312	NES15955838	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82939436 () rs orientation: forward

Symbol	Name	Function Class
Gm67812	predicted gene, 67812	1352 bp downstream
M1ap	meiosis 1 associated protein	within coordinates
Tssr57266	transcription start site region 57266	1908 bp downstream