rs30999578 SNP Detail

Summary

• ID
  rs30999578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26385992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGC CCCCCGAGAA AGATGCATGT
  R
  CTCGGCCACC CCGCTGGAAG AAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45489000	mCV22681633	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss134694007	ENSMUSSNP6500953	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss320687280	CHEV_3_26230765	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30999578					SNP	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26385992 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Cpgi13015	CpG island 13015	within coordinates
Cpgi13016	CpG island 13016	1329 bp proximal
Nlgn1	neuroligin 1	within coordinates
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	789 bp upstream
Tssr32830	transcription start site region 32830	329 bp upstream
Tssr32831	transcription start site region 32831	23 bp upstream
Tssr32832	transcription start site region 32832	within coordinates
Tssr32833	transcription start site region 32833	11 bp downstream
Tssr32834	transcription start site region 32834	61 bp downstream
Tssr32835	transcription start site region 32835	91 bp downstream